PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002034.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 109aa    MW: 11983.3 Da    PI: 4.5961
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002034.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.28.2e-083312856
                      AP2 28 rkrfslgkfgtaeeAakaaiaarkklege 56
                             ++r++lg+f taeeAa  +  a+ +l+g+
  Itr_sc002034.1_g00002.1  3 KTRIWLGTFNTAEEAAYVYNSAAIELRGP 31
                             489***********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.523138IPR001471AP2/ERF domain
CDDcd000186.27E-15137No hitNo description
SMARTSM003802.1E-5144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-13237IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-10238IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MRKTRIWLGT FNTAEEAAYV YNSAAIELRG PNTMTNFLTP LPRSTVSDYD STSESEVLPS  60
PTSVLRTCTS TAATKKHNRN ENNQCGVESP TIENGTMNVL STDCCLETE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631670.18e-22PREDICTED: pathogenesis-related genes transcriptional activator PTI6
RefseqXP_016442410.18e-22PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotQ9M3742e-15CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLK4AZT98e-20K4AZT9_SOLLC; Uncharacterized protein
TrEMBLA0A022QD472e-19A0A022QD47_ERYGU; Uncharacterized protein
STRINGSolyc01g095500.2.12e-19(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.11e-16cytokinin response factor 6